Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_3123Hypothetical protein; Identified by glimmer; putative. (427 aa)    
Predicted Functional Partners:
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
 
 0.678
ppa
Inorganic diphosphatase; Identified by similarity to SP:P38576; match to protein family HMM PF00719.
  
   0.546
FSU_2363
Putative membrane-associated zinc metalloprotease; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.
  
  
 0.543
FSU_2655
Outer membrane protein, OmpH family; Identified by similarity to GB:AAD23980.1; match to protein family HMM PF03938.
  
  
 0.515
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.488
FSU_1156
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.456
FSU_0288
Conserved hypothetical protein; Identified by similarity to GB:BAC95135.1.
  
 
 0.449
FSU_0850
Conserved domain protein; Identified by similarity to GB:AAB85960.1.
  
 
 0.449
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.438
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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