STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3135Pectate lyase family protein/carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422. (563 aa)    
Predicted Functional Partners:
FSU_1115
Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.
 
  
0.933
FSU_0577
Putative pectate lyase; Identified by match to protein family HMM PF00544.
  
  
 
0.927
xynC
Endo-1,4-beta-xylanase; Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.
  
   
 0.907
FSU_2866
BNR repeat protein; Identified by match to protein family HMM PF02012.
 
     0.776
FSU_2741
Putative xylanase; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.774
FSU_3006
Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P35811; match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.774
FSU_2294
Xylanase XynB; Identified by match to protein family HMM PF00331; match to protein family HMM PF03422.
  
     0.772
FSU_2851
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
  
     0.772
FSU_1195
Endo-1,4-beta-xylanase; Identified by similarity to SP:P10478; match to protein family HMM PF00331.
  
     0.770
xynE
Xylanase XynE; Identified by similarity to GB:AAG36765.1; match to protein family HMM PF00331; match to protein family HMM PF03422.
  
     0.770
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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