STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3136Conserved hypothetical protein; Identified by similarity to GB:AAO76206.1. (292 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase; Identified by similarity to SP:P10944; match to protein family HMM PF00221.
  
  
 0.781
FSU_1819
Putative pyridoxine kinase; Identified by match to protein family HMM PF08543.
  
 
  0.701
FSU_3137
Cytidine/deoxycytidylate deaminase zinc-binding domain protein; Identified by match to protein family HMM PF00383.
       0.521
FSU_1626
Identified by match to protein family HMM PF01564.
  
  
 0.492
FSU_3222
Capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to SP:P39862; match to protein family HMM PF00534.
  
     0.477
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.