STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3137Cytidine/deoxycytidylate deaminase zinc-binding domain protein; Identified by match to protein family HMM PF00383. (164 aa)    
Predicted Functional Partners:
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
  0.969
hpt
Hypoxanthine phosphoribosyltransferase; Identified by similarity to SP:P36766; match to protein family HMM PF00156; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
 0.904
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
    
  0.902
hisE
phosphoribosyl-ATP diphosphatase; Identified by similarity to SP:Q9Z471; match to protein family HMM PF01503; match to protein family HMM TIGR03188; Belongs to the PRA-PH family.
   
    0.726
xth
Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.
   
 
 0.650
FSU_3136
Conserved hypothetical protein; Identified by similarity to GB:AAO76206.1.
       0.521
FSU_1921
Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.
   
  
 0.467
FSU_2421
biotin--acetyl-CoA-carboxylase ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
  
    0.465
FSU_0448
Peptidase, M22 family; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725.
  
  
 0.400
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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