STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3142Putative lipoprotein. (650 aa)    
Predicted Functional Partners:
FSU_3143
Hypothetical protein; Identified by glimmer; putative.
       0.737
FSU_3181
Putative alginate O-acetyltransferase; Identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062.
  
 
 0.588
FSU_3287
Putative alginate O-acetyltransferase; Identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
  
 
 0.588
FSU_3138
Radical SAM domain protein; Identified by similarity to GB:AAP29339.1; match to protein family HMM PF04055.
       0.564
FSU_3139
Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.564
rdgB
Non-canonical purine NTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
       0.564
FSU_3141
Putative membrane protein; Identified by match to protein family HMM PF05154.
       0.564
FSU_3144
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
       0.507
FSU_3145
Putative lipoprotein; Identified by match to protein family HMM PF03781; match to protein family HMM PF07676; match to protein family HMM TIGR02171.
       0.507
FSU_3146
Conserved domain protein; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
       0.488
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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