STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3148Putative membrane protein. (588 aa)    
Predicted Functional Partners:
FSU_3147
Conserved domain protein; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
       0.655
FSU_3149
Putative endo-1,4-beta-glucanase; Identified by similarity to SP:P04955; match to protein family HMM PF01270.
       0.549
FSU_3146
Conserved domain protein; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
       0.500
FSU_3144
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
       0.482
FSU_3145
Putative lipoprotein; Identified by match to protein family HMM PF03781; match to protein family HMM PF07676; match to protein family HMM TIGR02171.
       0.482
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
       0.414
secDF
Protein-export membrane protein SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
    0.407
FSU_3143
Hypothetical protein; Identified by glimmer; putative.
       0.402
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.