STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3149Putative endo-1,4-beta-glucanase; Identified by similarity to SP:P04955; match to protein family HMM PF01270. (481 aa)    
Predicted Functional Partners:
FSU_2558
Identified by match to protein family HMM PF00759.
  
     0.602
FSU_3006
Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P35811; match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.577
FSU_1167
Beta-1,4-mannanase, man26C; Identified by similarity to SP:P55296; match to protein family HMM PF02156; match to protein family HMM PF03422; Belongs to the glycosyl hydrolase 26 family.
  
     0.562
xynC
Endo-1,4-beta-xylanase; Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.
 
   
 0.561
FSU_3148
Putative membrane protein.
       0.549
FSU_2265
Putative xylanase; Identified by similarity to GB:AAL16415.1; match to protein family HMM PF03422.
  
     0.536
FSU_2741
Putative xylanase; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.512
FSU_2181
Beta-1,4-mannanase, Man26A; Identified by similarity to SP:P55298; match to protein family HMM PF02156; match to protein family HMM PF03422; Belongs to the glycosyl hydrolase 26 family.
  
     0.501
FSU_2528
Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839.
  
   
 0.497
FSU_1373
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.
  
     0.489
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.