STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3151Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241. (1483 aa)    
Predicted Functional Partners:
FSU_1031
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
     
 0.571
nrdD
Anaerobic ribonucleoside-triphosphate reductase; Identified by similarity to SP:P07071; match to protein family HMM TIGR02487.
 
     0.508
FSU_3152
Conserved domain protein; Identified by similarity to PIR:C97844.
       0.452
FSU_3238
purD domain protein; Identified by similarity to GB:CAA04374.1; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655.
 
     0.435
FSU_0181
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
       0.426
FSU_2077
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
       0.426
adhB
Alcohol dehydrogenase II; Identified by similarity to PIR:A25978; match to protein family HMM PF00465.
   
  
 0.419
FSU_1931
Alcohol dehydrogenase, iron-dependent; Identified by match to protein family HMM PF00465.
   
  
 0.419
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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