STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3181Putative alginate O-acetyltransferase; Identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062. (616 aa)    
Predicted Functional Partners:
FSU_3182
Conserved domain protein; Identified by similarity to GB:AAO77788.1.
    0.916
FSU_3183
Conserved domain protein.
 
    0.910
hisS
histidine--tRNA ligase; Identified by similarity to SP:P56194; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.
       0.653
FSU_0060
Putative acyl carrier protein; Identified by similarity to SP:P20804.
  
 
 0.650
FSU_0275
Putative acyl carrier protein; Identified by similarity to SP:P11830; match to protein family HMM PF00550.
  
 
 0.650
FSU_0276
Putative acyl carrier protein; Identified by similarity to GB:AAG38843.1.
  
 
 0.650
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.650
FSU_3158
Conserved domain protein; Identified by similarity to GB:AAN66903.1.
  
     0.625
FSU_1215
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.441
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
       0.432
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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