STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3183Conserved domain protein. (538 aa)    
Predicted Functional Partners:
FSU_3181
Putative alginate O-acetyltransferase; Identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062.
 
  
  0.921
FSU_3182
Conserved domain protein; Identified by similarity to GB:AAO77788.1.
 
    
0.814
hisS
histidine--tRNA ligase; Identified by similarity to SP:P56194; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.
       0.773
FSU_1954
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
  
  0.743
FSU_1953
Conserved domain protein; Identified by similarity to GB:CAD69025.1; match to protein family HMM TIGR02148.
  
  
  0.742
FSU_1795
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
  
  0.714
FSU_1794
Conserved domain protein; Identified by similarity to GB:AAO52378.1; match to protein family HMM TIGR02148.
  
  
  0.713
FSU_3052
Fibro-slime domain protein; Identified by similarity to PIR:C95146; similarity to GB:BAB47241.1; match to protein family HMM TIGR02148.
  
  
  0.705
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
  
     0.684
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.676
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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