Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_3196Conserved hypothetical protein; Identified by similarity to GB:AAM25747.1. (188 aa)    
Predicted Functional Partners:
FSU_3195
Putative membrane protein; Identified by match to protein family HMM PF04342.
       0.773
FSU_3197
Putative glutamine cyclotransferase; Identified by similarity to PIR:T08168; match to protein family HMM PF05096.
       0.546
FSU_0661
Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.
  
     0.530
FSU_1086
Putative aspartate aminotransferase; Identified by similarity to GB:CAA64186.1; match to protein family HMM PF00155.
  
     0.508
FSU_0102
Putative membrane protein.
  
     0.425
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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