STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3206Lipoprotein releasing system transmembrane protein, LolC/E family; Identified by match to protein family HMM PF02687. (416 aa)    
Predicted Functional Partners:
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 0.996
FSU_2076
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.955
pal
Putative peptidoglycan-associated lipoprotein; Identified by similarity to SP:P07176; match to protein family HMM PF00691; Belongs to the Pal lipoprotein family.
  
 
 
 0.723
tolB
Tol-pal system beta propeller repeat protein TolB; Identified by match to protein family HMM PF04052; match to protein family HMM PF07676.
  
   
 0.721
FSU_2654
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
 
   
 0.707
FSU_0396
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
   
 
 0.671
FSU_2238
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
   
 
 0.671
FSU_2598
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.671
FSU_3205
Conserved hypothetical protein; Identified by match to protein family HMM PF05635.
       0.668
rpsA
Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717.
 
     0.630
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.