STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3217Conserved domain protein; Identified by similarity to GB:AAO77512.1. (103 aa)    
Predicted Functional Partners:
FSU_1522
Conserved hypothetical protein; Identified by similarity to PIR:H90304.
  
     0.662
FSU_2204
Conserved hypothetical protein.
  
     0.650
FSU_2276
Conserved hypothetical protein; Identified by similarity to PIR:B87592; match to protein family HMM PF07804; match to protein family HMM PF07805.
  
     0.588
FSU_1844
hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.
  
     0.567
FSU_2277
Putative DNA-binding protein; Identified by match to protein family HMM PF01381.
  
     0.551
FSU_3218
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
       0.458
FSU_3219
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
       0.458
FSU_3220
Putative 1-aminocyclopropane-1-carboxylate deaminase; Identified by similarity to GB:BAA92150.1.
       0.458
FSU_1350
Conserved hypothetical protein; Identified by similarity to GB:CAD30163.1.
  
     0.446
FSU_1418
Conserved hypothetical protein; Identified by similarity to GB:AAM05757.1; match to protein family HMM PF04326.
  
     0.431
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.