STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3219Bacterial sugar transferase; Identified by match to protein family HMM PF02397. (206 aa)    
Predicted Functional Partners:
FSU_3218
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.938
FSU_1409
N-acetylmannosaminyltransferase; Identified by similarity to SP:P27620; match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.
    
 0.908
FSU_3252
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
 
    0.858
FSU_3222
Capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to SP:P39862; match to protein family HMM PF00534.
    0.845
FSU_1215
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.813
FSU_3220
Putative 1-aminocyclopropane-1-carboxylate deaminase; Identified by similarity to GB:BAA92150.1.
       0.780
FSU_0181
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
 
  
 0.754
FSU_2077
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
 
  
 0.746
FSU_3253
Putative UDP-glucose 4-epimerase; Identified by similarity to SP:Q56623; match to protein family HMM PF01073; match to protein family HMM PF01370.
 
  
 0.699
rmd
GDP-4-dehydro-6-deoxy-D-mannose reductase; Identified by similarity to GB:AAG35361.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
  
 0.531
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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