STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3222Capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to SP:P39862; match to protein family HMM PF00534. (368 aa)    
Predicted Functional Partners:
FSU_3219
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
 
  0.861
FSU_3224
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
 
     0.841
FSU_3223
Identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534; overlaps another CDS with the same product name.
 
    
0.839
FSU_3225
Putative capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to GB:BAA82284.1; match to protein family HMM PF00535.
 
    0.768
FSU_3254
Lipopolysaccharide synthesis sugar transferase; Identified by similarity to GB:AAF18949.1; match to protein family HMM PF02397.
 
 
  0.633
FSU_1215
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.600
FSU_3226
Conserved hypothetical protein; Identified by similarity to GB:AAO75149.1.
  
    0.595
FSU_3227
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
       0.587
FSU_1321
ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.
    
 
 0.540
FSU_1130
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
     0.535
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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