STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3225Putative capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to GB:BAA82284.1; match to protein family HMM PF00535. (320 aa)    
Predicted Functional Partners:
FSU_3228
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
     0.862
FSU_1413
Putative CDP-glycerol:glycerophosphate glycerophosphotransferase; Identified by similarity to SP:P27621; match to protein family HMM PF04464.
 
    0.828
FSU_3223
Identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534; overlaps another CDS with the same product name.
 
    0.793
FSU_3222
Capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to SP:P39862; match to protein family HMM PF00534.
 
    0.770
FSU_0924
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
  
     0.742
FSU_3224
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
  
    0.727
FSU_1416
Putative rhamnosyltransferase; Identified by similarity to PIR:T00087; match to protein family HMM PF00535.
  
     0.718
FSU_0922
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535; overlaps another CDS with the same product name.
  
     0.712
FSU_3226
Conserved hypothetical protein; Identified by similarity to GB:AAO75149.1.
 
    0.696
FSU_3227
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
  
    0.637
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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