STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
FSU_3230Acyltransferase family protein. (332 aa)    
Predicted Functional Partners:
FSU_3229
Putative D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:O29445; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.773
FSU_3231
Hydro-lyase, tartrate/fumarate family; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
       0.773
FSU_3232
Putative membrane protein.
       0.736
FSU_3233
Tartrate/fumarate family protein.
       0.732
FSU_3234
Identified by match to protein family HMM PF03972.
       0.732
rfbB
dTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P37777; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01181.
  
  
 0.670
glf
UDP-galactopyranose mutase; Identified by similarity to SP:P37747; match to protein family HMM PF03275; match to protein family HMM TIGR00031.
  
  
 0.663
FSU_3261
Sugar epimerase family protein; Identified by similarity to GB:AAC46089.1; match to protein family HMM PF01370; match to protein family HMM PF07993.
  
  
 0.640
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
  0.585
FSU_2799
Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
  
  
 0.584
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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