STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3234Identified by match to protein family HMM PF03972. (452 aa)    
Predicted Functional Partners:
FSU_3231
Hydro-lyase, tartrate/fumarate family; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
 
 
  0.934
FSU_3233
Tartrate/fumarate family protein.
 
 
  0.909
FSU_1439
Putative phosphoenolpyruvate mutase; Identified by similarity to GB:AAG26465.1; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02320.
  
  
 0.874
FSU_3239
Conserved hypothetical protein; Identified by similarity to PIR:A69229.
 
     0.805
FSU_3229
Putative D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:O29445; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.804
FSU_3232
Putative membrane protein.
       0.773
FSU_3230
Acyltransferase family protein.
       0.732
fumB
Fumarate hydratase, class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
  0.726
FSU_3237
Conserved hypothetical protein; Identified by similarity to GB:AAO36720.1.
 
  
 0.696
FSU_0296
Identified by match to protein family HMM PF00501.
 
 
 0.677
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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