STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3239Conserved hypothetical protein; Identified by similarity to PIR:A69229. (299 aa)    
Predicted Functional Partners:
FSU_3237
Conserved hypothetical protein; Identified by similarity to GB:AAO36720.1.
 
     0.921
FSU_3238
purD domain protein; Identified by similarity to GB:CAA04374.1; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655.
 
     0.880
FSU_3231
Hydro-lyase, tartrate/fumarate family; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
 
     0.828
FSU_3234
Identified by match to protein family HMM PF03972.
 
     0.805
nuoBC
NADH-quinone oxidoreductase, B/C subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
   0.790
FSU_3233
Tartrate/fumarate family protein.
 
     0.755
FSU_3240
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
       0.727
FSU_3241
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.
 
     0.675
FSU_3236
Conserved domain protein; Identified by similarity to OMNI:PSPTO2283.
 
     0.504
FSU_0137
Putative type II restriction endonuclease; Possibly an isoschizomer of SeqORFC57P found in Streptococcus equi; identified by similarity to SP:P00640; match to protein family HMM PF06616.
  
     0.437
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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