FSU_3244 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FSU_3244

Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (250 aa)

Predicted Functional Partners:

FSU_3243

0.777

FSU_1146

0.774

FSU_1215

0.710

FSU_3242

0.654

FSU_3246

0.600

FSU_1321

0.540

FSU_3248

0.491

FSU_3224

0.489

rmd

0.474

FSU_2799

0.472

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_1146	FSU_1215	FSU_1146	FSU_1215	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.748
FSU_1146	FSU_1321	FSU_1146	FSU_1321	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	0.540
FSU_1146	FSU_2799	FSU_1146	FSU_2799	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	0.472
FSU_1146	FSU_3244	FSU_1146	FSU_3244	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.774
FSU_1146	rmd	FSU_1146	FSU_2786	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	GDP-4-dehydro-6-deoxy-D-mannose reductase; Identified by similarity to GB:AAG35361.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.622
FSU_1215	FSU_1146	FSU_1215	FSU_1146	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.748
FSU_1215	FSU_2799	FSU_1215	FSU_2799	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	0.985
FSU_1215	FSU_3224	FSU_1215	FSU_3224	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.	0.600
FSU_1215	FSU_3244	FSU_1215	FSU_3244	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.710
FSU_1215	FSU_3248	FSU_1215	FSU_3248	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.600
FSU_1215	rmd	FSU_1215	FSU_2786	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	GDP-4-dehydro-6-deoxy-D-mannose reductase; Identified by similarity to GB:AAG35361.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.871
FSU_1321	FSU_1146	FSU_1321	FSU_1146	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.540
FSU_1321	FSU_3224	FSU_1321	FSU_3224	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.	0.540
FSU_1321	FSU_3244	FSU_1321	FSU_3244	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.540
FSU_1321	FSU_3248	FSU_1321	FSU_3248	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.540
FSU_2799	FSU_1146	FSU_2799	FSU_1146	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.472
FSU_2799	FSU_1215	FSU_2799	FSU_1215	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.985
FSU_2799	FSU_3224	FSU_2799	FSU_3224	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.	0.543
FSU_2799	FSU_3244	FSU_2799	FSU_3244	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.472
FSU_2799	FSU_3248	FSU_2799	FSU_3248	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.	0.472