Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_3253Putative UDP-glucose 4-epimerase; Identified by similarity to SP:Q56623; match to protein family HMM PF01073; match to protein family HMM PF01370. (292 aa)    
Predicted Functional Partners:
FSU_3254
Lipopolysaccharide synthesis sugar transferase; Identified by similarity to GB:AAF18949.1; match to protein family HMM PF02397.
    0.988
FSU_3252
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
 
  0.981
FSU_3250
Putative polysaccharide biosynthesis protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
 0.822
FSU_3251
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.
  
 
  0.815
FSU_3255
Conserved domain protein; Identified by similarity to PIR:A81984.
       0.774
FSU_3248
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
 
 
  0.764
FSU_3249
UDP-N-acetylglucosamine 2-epimerase; Identified by similarity to GB:AAM22597.1; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.749
FSU_3219
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
    0.703
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
  0.627
glf
UDP-galactopyranose mutase; Identified by similarity to SP:P37747; match to protein family HMM PF03275; match to protein family HMM TIGR00031.
    
 0.613
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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