STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3255Conserved domain protein; Identified by similarity to PIR:A81984. (172 aa)    
Predicted Functional Partners:
FSU_3254
Lipopolysaccharide synthesis sugar transferase; Identified by similarity to GB:AAF18949.1; match to protein family HMM PF02397.
 
    0.810
FSU_3250
Putative polysaccharide biosynthesis protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
     0.789
FSU_3251
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.
  
    0.785
FSU_3253
Putative UDP-glucose 4-epimerase; Identified by similarity to SP:Q56623; match to protein family HMM PF01073; match to protein family HMM PF01370.
       0.774
FSU_3252
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
       0.773
FSU_3249
UDP-N-acetylglucosamine 2-epimerase; Identified by similarity to GB:AAM22597.1; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
  0.768
FSU_3218
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  0.742
FSU_3248
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
       0.687
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852.
  
 
 0.575
FSU_3246
Conserved domain protein; Identified by similarity to PIR:G84004.
       0.541
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.