Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
FSU_3314Conserved hypothetical protein; Identified by similarity to GB:AAM41778.1; match to protein family HMM PF03966. (99 aa)    
Predicted Functional Partners:
FSU_3315
Conserved domain protein; Identified by match to protein family HMM PF07719.
       0.773
FSU_3316
Putative twitching motility protein PilT; Identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
       0.773
FSU_3313
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.705
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.516
FSU_2720
HIT family protein; Identified by match to protein family HMM PF01230.
 
    0.441
FSU_3312
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.435
FSU_3311
Glycosyltransferase, group 2 family; Identified by similarity to SP:P77757; match to protein family HMM PF00535.
       0.420
ribE
Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.
       0.406
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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