STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3315Conserved domain protein; Identified by match to protein family HMM PF07719. (964 aa)    
Predicted Functional Partners:
FSU_3316
Putative twitching motility protein PilT; Identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
       0.776
FSU_3314
Conserved hypothetical protein; Identified by similarity to GB:AAM41778.1; match to protein family HMM PF03966.
       0.773
FSU_0362
UDP-3-O-acyl N-acetylglycosamine deacetylase-like protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis. Belongs to the LpxC family.
    
 
 0.715
FSU_3313
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.706
FSU_3312
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.428
nusB
N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
     
 0.416
FSU_3311
Glycosyltransferase, group 2 family; Identified by similarity to SP:P77757; match to protein family HMM PF00535.
       0.416
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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