Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB01195.1Hypothetical protein. (265 aa)    
Predicted Functional Partners:
AGB01194.1
Hypothetical protein.
       0.629
AGB01858.1
PFAM: Mitochondrial small ribosomal subunit Rsm22.
  
     0.611
AGB03679.1
Hypothetical protein.
  
   
 0.592
AGB01844.1
PFAM: Protein of unknown function (DUF357).
  
     0.590
AGB03767.1
Hypothetical protein.
  
   
 0.574
AGB01161.1
PFAM: Chorismate mutase type II; TIGRFAM: chorismate mutase, archaeal type.
  
     0.556
AGB01617.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family.
 
     0.556
AGB01439.1
ABC-type Na+ efflux pump, permease component.
  
     0.551
AGB01263.1
PFAM: Kinase binding protein CGI-121.
  
     0.544
AGB03849.1
PilT domain protein; PFAM: Fcf1.
  
     0.533
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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