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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB01405.1Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily. (494 aa)    
Predicted Functional Partners:
AGB01404.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
       0.542
AGB02925.1
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase.
 
   
 0.517
AGB02475.1
PFAM: Protein of unknown function DUF58.
 
  
 0.516
AGB02012.1
Selenocysteine lyase; PFAM: Phosphoadenosine phosphosulfate reductase family; Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily.
 
   
 0.495
AGB03461.1
Serine O-acetyltransferase; PFAM: Domain of unknown function DUF59; TIGRFAM: serine O-acetyltransferase.
  
  
 0.494
AGB02069.1
Membrane-bound serine protease (ClpP class); PFAM: NfeD-like.
  
    0.478
AGB02027.1
FHA domain-containing protein; PFAM: FHA domain.
 
   
 0.474
AGB01551.1
S-layer domain-containing protein.
 
     0.446
AGB01577.1
S-layer domain-containing protein.
 
     0.442
AGB03188.1
Hypothetical protein.
  
     0.434
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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