spt5 protein (Methanoregula formicica) - STRING interaction network

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spt5

Ribosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (176 aa)

Predicted Functional Partners:

rpl11

0.990

rpl1

0.990

rpl10

0.989

spt4

0.988

rpl30

0.985

rps3

0.985

rps10

0.982

rpoD

0.980

AGB02078.1

0.979

rpl6

0.975

Your Current Organism:

Methanoregula formicica

NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGB02078.1	rpl1	Metfor_1028	Metfor_0416	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.952
AGB02078.1	rpl10	Metfor_1028	Metfor_0417	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.960
AGB02078.1	rpl11	Metfor_1028	Metfor_0415	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.956
AGB02078.1	rpl30	Metfor_1028	Metfor_2634	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal.	0.946
AGB02078.1	rpl6	Metfor_1028	Metfor_2639	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Archaeal ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.957
AGB02078.1	rpoD	Metfor_1028	Metfor_0485	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
AGB02078.1	rps10	Metfor_1028	Metfor_2513	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein S10/S20; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.975
AGB02078.1	rps3	Metfor_1028	Metfor_2649	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.961
AGB02078.1	spt4	Metfor_1028	Metfor_2869	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, subunit E; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.	0.892
AGB02078.1	spt5	Metfor_1028	Metfor_0403	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ribosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.	0.979
rpl1	AGB02078.1	Metfor_0416	Metfor_1028	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.952
rpl1	rpl10	Metfor_0416	Metfor_0417	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rpl1	rpl11	Metfor_0416	Metfor_0415	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.999
rpl1	rpl30	Metfor_0416	Metfor_2634	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal.	0.997
rpl1	rpl6	Metfor_0416	Metfor_2639	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	Archaeal ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.998
rpl1	rpoD	Metfor_0416	Metfor_0485	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
rpl1	rps10	Metfor_0416	Metfor_2513	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	Ribosomal protein S10/S20; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.990
rpl1	rps3	Metfor_0416	Metfor_2649	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.992
rpl1	spt5	Metfor_0416	Metfor_0403	Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	Ribosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.	0.990
rpl10	AGB02078.1	Metfor_0417	Metfor_1028	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.960

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