Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB01701.1Selenocysteine lyase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein. (387 aa)    
Predicted Functional Partners:
AGB03456.1
PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family; FeS cluster assembly scaffold IscU; FeS cluster assembly scaffold protein NifU, Clostridium type.
  
 
 0.968
AGB03836.1
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
 
  
 0.899
AGB03837.1
ABC-type transport system involved in Fe-S cluster assembly, permease component; PFAM: Uncharacterized protein family (UPF0051).
 
 
 0.899
AGB03461.1
Serine O-acetyltransferase; PFAM: Domain of unknown function DUF59; TIGRFAM: serine O-acetyltransferase.
  
  
 0.862
AGB01700.1
Hypothetical protein.
       0.777
AGB01699.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
    0.760
AGB01698.1
Hypothetical protein.
 
     0.646
moaA
Putative molybdenum cofactor biosynthesis protein A, archaeal; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.
 
 
 0.510
cysS
PFAM: tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.508
AGB01726.1
PFAM: YeeE/YedE family (DUF395).
 
     0.492
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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