Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB01712.1Hypothetical protein; PFAM: Rubrerythrin. (152 aa)    
Predicted Functional Partners:
pyrK
2-polyprenylphenol hydroxylase-like oxidoreductase; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
   
 
 0.696
AGB01702.1
Hypothetical protein.
  
     0.604
AGB03596.1
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit.
 
 
   0.562
AGB03808.1
PFAM: Aldo/keto reductase family.
 
 
   0.561
AGB01790.1
Hypothetical protein; Manually curated; non-canonical start codon.
  
     0.556
AGB03770.1
PFAM: Rubrerythrin.
     
 0.505
AGB01713.1
Molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain.
       0.501
AGB01828.1
PFAM: Desulfoferrodoxin; Desulfoferrodoxin, N-terminal domain; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain.
  
  
 0.472
AGB03568.1
Hypothetical protein.
 
     0.470
AGB01151.1
PFAM: Rubrerythrin.
  
  
 0.458
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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