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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB01720.1Putative redox protein, regulator of disulfide bond formation; PFAM: OsmC-like protein. (174 aa)    
Predicted Functional Partners:
AGB01721.1
PFAM: Putative redox-active protein (C_GCAxxG_C_C); TIGRFAM: C_GCAxxG_C_C family probable redox protein.
 
     0.790
AGB02112.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
 
     0.653
AGB02027.1
FHA domain-containing protein; PFAM: FHA domain.
 
  
 0.609
AGB03319.1
Hypothetical protein.
  
     0.584
AGB02110.1
PFAM: Archaeal Peptidase A24 C-terminus Type II.
 
     0.581
AGB03166.1
PAS domain S-box; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
  
     0.570
AGB03900.1
Hypothetical protein.
  
     0.524
AGB02678.1
PFAM: Tetratricopeptide repeat.
 
     0.512
AGB01150.1
PFAM: Laminin G domain.
  
     0.497
AGB02703.1
Serine/threonine protein phosphatase; PFAM: Stage II sporulation protein E (SpoIIE).
  
     0.466
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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