Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB01738.1PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus. (417 aa)    
Predicted Functional Partners:
AGB01737.1
Formate dehydrogenase, alpha subunit, archaeal-type; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type.
  
 0.993
AGB01707.1
Formate dehydrogenase, alpha subunit, archaeal-type; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type.
  
 0.972
AGB01710.1
Formate dehydrogenase, alpha subunit, archaeal-type; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type.
  
 0.972
AGB03595.1
Polyferredoxin, heterodixulfide reductase subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 
 0.950
AGB03596.1
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit.
 
 0.949
AGB03593.1
TIGRFAM: CoB--CoM heterodisulfide reductase, subunit C.
 
 
 0.933
AGB03594.1
PFAM: Cysteine-rich domain; TIGRFAM: CoB--CoM heterodisulfide reductase, subunit B.
 
 
 0.931
AGB01718.1
Formylmethanofuran dehydrogenase subunit D; PFAM: Molydopterin dinucleotide binding domain.
 
 
 0.929
AGB01693.1
NADH:ubiquinone oxidoreductase chain I-like protein; PFAM: 4Fe-4S binding domain.
 
 
  0.915
AGB01742.1
Dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit; PFAM: 4Fe-4S binding domain.
 
 
  0.909
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.