Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB01757.1PFAM: Glycosyl transferase family 2. (235 aa)    
Predicted Functional Partners:
AGB01755.1
PFAM: Protein of unknown function (DUF2791).
       0.797
AGB01756.1
Hypothetical protein.
       0.777
AGB01512.1
PFAM: Glycosyl transferase family 2.
  
     0.696
AGB01272.1
Putative membrane protein; PFAM: GtrA-like protein; Glycosyl transferase family 2.
 
     0.645
AGB01754.1
Hypothetical protein.
     
 0.628
AGB03513.1
PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
  
 0.628
AGB02435.1
PFAM: Glycosyl transferase family 2.
 
     0.572
AGB03514.1
Chlor_Arch_YYY domain protein; PFAM: Uncharacterized membrane protein (DUF2298); TIGRFAM: Chlor_Arch_YYY domain; manually curated; non-canonical start codon.
 
     0.555
AGB01516.1
ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.537
AGB02961.1
Glycosyltransferase; PFAM: Pentapeptide repeats (8 copies); Glycosyl transferases group 1.
 
  
 0.535
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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