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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB01793.1ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (262 aa)    
Predicted Functional Partners:
AGB01794.1
Ni2+-binding GTPase, urease/hydrogenase maturation protein; PFAM: CobW/HypB/UreG, nucleotide-binding domain.
 
  
 0.993
AGB01795.1
Putative Fe-S protein.
 
    0.989
AGB03211.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.876
AGB01897.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.875
AGB01179.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.872
AGB01550.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.868
AGB01578.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
  
 
 0.849
AGB01486.1
Hypothetical protein.
   
 
 0.808
AGB03351.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.808
AGB01425.1
Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB.
  
  
 0.779
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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