Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB01824.1Putative ATPase. (421 aa)    
Predicted Functional Partners:
AGB01825.1
Hypothetical protein.
       0.800
AGB02760.1
Type I restriction-modification system methyltransferase subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); N-6 DNA Methylase; Eco57I restriction endonuclease.
 
     0.578
AGB01823.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2179).
       0.563
AGB01826.1
Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
       0.525
AGB01827.1
Putative flavoprotein; PFAM: Metallo-beta-lactamase superfamily.
       0.524
AGB01828.1
PFAM: Desulfoferrodoxin; Desulfoferrodoxin, N-terminal domain; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain.
       0.488
AGB01819.1
HEAT repeat-containing protein; PFAM: PBS lyase HEAT-like repeat.
 
     0.462
AGB03426.1
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
     0.417
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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