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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB01916.1PFAM: Protein of unknown function (DUF1188). (298 aa)    
Predicted Functional Partners:
AGB01915.1
PFAM: Protein of unknown function (DUF3236).
  
  
 0.968
AGB01917.1
Hypothetical protein; PFAM: NIF3 (NGG1p interacting factor 3).
       0.850
AGB01914.1
PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB.
     
 0.838
AGB01919.1
Putative dinucleotide-utilizing enzyme of the ThiF/HesA family; PFAM: ThiF family.
     
 0.495
AGB01920.1
PFAM: Uncharacterised protein family (UPF0254); Belongs to the UPF0254 family.
     
 0.495
AGB01913.1
Nickel uptake transporter family protein; PFAM: Nickel uptake substrate-specific transmembrane region.
       0.479
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.