AGB01992.1 protein (Methanoregula formicica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AGB01992.1

Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (392 aa)

Predicted Functional Partners:

AGB01991.1

0.995

cbiM

0.987

cbiN

0.987

AGB03240.1

0.967

AGB03670.1

0.962

AGB03243.1

0.943

AGB03671.1

0.912

ecfA

0.906

AGB03672.1

0.874

AGB03242.1

0.865

Your Current Organism:

Methanoregula formicica

NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGB01991.1	AGB01992.1	Metfor_0936	Metfor_0937	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.995
AGB01991.1	AGB03240.1	Metfor_0936	Metfor_2235	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	0.937
AGB01991.1	AGB03242.1	Metfor_0936	Metfor_2237	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	Hypothetical protein.	0.925
AGB01991.1	AGB03243.1	Metfor_0936	Metfor_2238	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	ABC-type Co2+ transport system, permease component; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM.	0.978
AGB01991.1	AGB03670.1	Metfor_0936	Metfor_2682	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	0.934
AGB01991.1	AGB03671.1	Metfor_0936	Metfor_2683	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.	0.986
AGB01991.1	AGB03672.1	Metfor_0936	Metfor_2684	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	ABC-type Co2+ transport system, permease component; PFAM: Cobalt uptake substrate-specific transmembrane region.	0.932
AGB01991.1	cbiM	Metfor_0936	Metfor_0934	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.999
AGB01991.1	cbiN	Metfor_0936	Metfor_0935	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	ABC-type cobalt transport system, periplasmic component; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.999
AGB01991.1	ecfA	Metfor_0936	Metfor_2236	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	Cobalt transport protein ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.984
AGB01992.1	AGB01991.1	Metfor_0937	Metfor_0936	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	0.995
AGB01992.1	AGB03240.1	Metfor_0937	Metfor_2235	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	0.967
AGB01992.1	AGB03242.1	Metfor_0937	Metfor_2237	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Hypothetical protein.	0.865
AGB01992.1	AGB03243.1	Metfor_0937	Metfor_2238	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	ABC-type Co2+ transport system, permease component; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM.	0.943
AGB01992.1	AGB03670.1	Metfor_0937	Metfor_2682	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.	0.962
AGB01992.1	AGB03671.1	Metfor_0937	Metfor_2683	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.	0.912
AGB01992.1	AGB03672.1	Metfor_0937	Metfor_2684	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	ABC-type Co2+ transport system, permease component; PFAM: Cobalt uptake substrate-specific transmembrane region.	0.874
AGB01992.1	cbiM	Metfor_0937	Metfor_0934	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.987
AGB01992.1	cbiN	Metfor_0937	Metfor_0935	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	ABC-type cobalt transport system, periplasmic component; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.987
AGB01992.1	ecfA	Metfor_0937	Metfor_2236	Cobalt transport protein ATP-binding subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalt transport protein ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.906

page 1 of 6

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About