Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB02039.1Hypothetical protein. (180 aa)    
Predicted Functional Partners:
AGB02040.1
PFAM: Ion channel.
       0.559
AGB02038.1
PFAM: Acylphosphatase.
     
 0.491
AGB02547.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.469
AGB02543.1
PFAM: Archaebacterial flagellin.
  
  
 0.453
AGB02544.1
Hypothetical protein.
  
  
 0.446
AGB02545.1
Putative ATPase involved in flagella biogenesis; PFAM: KaiC.
  
  
 0.414
AGB01379.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
  
  
 0.412
AGB01961.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
  
  
 0.412
AGB02119.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
  
  
 0.412
AGB02546.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
  
  
 0.412
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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