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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB02045.1PFAM: Uncharacterised protein family (UPF0179); Belongs to the UPF0179 family. (148 aa)    
Predicted Functional Partners:
egsA
Glycerol dehydrogenase-like oxidoreductase; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.
 
   
 0.936
AGB02043.1
PFAM: Membrane protein of unknown function DUF63.
 
   
 0.780
AGB02042.1
PFAM: Integral membrane protein DUF95.
 
   
 0.778
AGB03882.1
Putative metal-dependent protease of the PAD1/JAB1 superfamily.
  
     0.707
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
 
     0.703
AGB02784.1
TIGRFAM: TIGR01210 family protein.
  
     0.699
AGB03895.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.682
AGB02791.1
Putative coiled-coil protein.
  
     0.677
AGB03622.1
PFAM: Integral membrane protein DUF106.
  
     0.670
AGB02698.1
Queuine tRNA-ribosyltransferase; PFAM: PUA domain.
  
     0.658
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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