Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGB02170.1PFAM: PBS lyase HEAT-like repeat; HEAT repeat. (155 aa)    
Predicted Functional Partners:
AGB02171.1
Hypothetical protein.
       0.752
AGB01653.1
PFAM: PBS lyase HEAT-like repeat.
 
     0.747
AGB01248.1
PFAM: PBS lyase HEAT-like repeat; HEAT repeat.
  
     0.734
AGB02172.1
Hypothetical protein.
       0.721
AGB01652.1
Hypothetical protein.
  
     0.717
AGB02705.1
PFAM: PBS lyase HEAT-like repeat; HEAT repeat.
 
     0.711
AGB01348.1
PFAM: PBS lyase HEAT-like repeat.
  
     0.697
AGB03038.1
HEAT repeat-containing protein; PFAM: HEAT repeat.
  
     0.589
AGB02173.1
Hypothetical protein.
       0.585
AGB01403.1
Hypothetical protein.
  
     0.576
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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