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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB02587.1PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (237 aa)    
Predicted Functional Partners:
AGB02916.1
PFAM: Carbonic anhydrase.
  
  
 0.591
AGB02586.1
Uncharacterized protein, 4-oxalocrotonate tautomerase; PFAM: Tautomerase enzyme.
 
     0.526
AGB03408.1
PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family.
     
 0.466
AGB02911.1
PFAM: Formate/nitrite transporter; TIGRFAM: formate/nitrite transporter.
     
 0.453
AGB03406.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: ABC transporter.
     
 0.452
AGB03407.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
     
 0.430
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.