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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB03016.1PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:AMP phosphotransferase. (495 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.756
AGB02112.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
   
    0.747
AGB02706.1
Exopolyphosphatase; PFAM: HD domain; Ppx/GppA phosphatase family.
 
  
 0.727
AGB03378.1
Hypothetical protein.
 
    0.659
AGB03089.1
Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA.
  
  
 0.654
AGB02439.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
 
    0.649
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.614
AGB01282.1
Uncharacterized radical SAM protein YgiQ; PFAM: Domain of unknown function (DUF3362); Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ.
  
    0.596
AGB02565.1
PFAM: Radical SAM superfamily; B12 binding domain; TIGRFAM: B12-binding domain/radical SAM domain protein, MJ_1487 family.
  
    0.596
AGB02707.1
Hypothetical protein; PFAM: HD domain; CHAD domain.
 
     0.581
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.