STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB03020.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
AGB03019.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
       0.877
AGB01527.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
     0.866
AGB02656.1
RecJ-like exonuclease with DnaJ-type Zn-finger domain; PFAM: DHH family; S1 RNA binding domain; OB-fold nucleic acid binding domain.
  
   
 0.703
AGB02229.1
Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family.
  
     0.672
AGB01813.1
Single-stranded DNA-binding protein; PFAM: OB-fold nucleic acid binding domain.
  
     0.670
AGB02776.1
Putative methanogenesis marker domain 9; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, putative; putative methanogenesis marker domain 9.
  
     0.653
AGB02138.1
Putative subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain.
  
     0.629
AGB02778.1
PFAM: Protein of unknown function (DUF447).
 
     0.604
AGB03121.1
PFAM: Uncharacterized protein conserved in archaea (DUF2114); TIGRFAM: putative methanogenesis marker protein 14.
  
     0.602
mtrC
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
  
     0.596
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.