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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB03028.1Putative transcriptional regulator with HTH domain; PFAM: Divergent AAA domain. (469 aa)    
Predicted Functional Partners:
AGB01881.1
Putative transcriptional regulator with HTH domain; PFAM: Bacterial regulatory protein, arsR family; Divergent AAA domain.
  
  
 
0.927
AGB02763.1
Putative transcriptional regulator with HTH domain; PFAM: Divergent AAA domain.
  
  
 
0.918
AGB03030.1
PFAM: Uncharacterized conserved protein (DUF2081); Protein of unknown function DUF262.
 
    0.499
AGB02961.1
Glycosyltransferase; PFAM: Pentapeptide repeats (8 copies); Glycosyl transferases group 1.
  
    0.485
AGB02632.1
Putative ATPase (AAA+ superfamily).
 
     0.475
AGB02760.1
Type I restriction-modification system methyltransferase subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); N-6 DNA Methylase; Eco57I restriction endonuclease.
 
    0.471
AGB02463.1
Putative ATPase (AAA+ superfamily).
 
     0.468
AGB03026.1
Hypothetical protein.
       0.459
AGB03027.1
Hypothetical protein.
       0.459
AGB03161.1
Putative ATPase (AAA+ superfamily); PFAM: Archaeal ATPase.
 
     0.445
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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