Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGB03040.1 | AGB03042.1 | Metfor_2027 | Metfor_2029 | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | 0.887 |
AGB03040.1 | AGB03043.1 | Metfor_2027 | Metfor_2030 | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.987 |
AGB03040.1 | AGB03044.1 | Metfor_2027 | Metfor_2031 | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | Hypothetical protein. | 0.859 |
AGB03040.1 | AGB03045.1 | Metfor_2027 | Metfor_2032 | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | Hypothetical protein. | 0.595 |
AGB03040.1 | tfe | Metfor_2027 | Metfor_2028 | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...] | 0.890 |
AGB03042.1 | AGB03040.1 | Metfor_2029 | Metfor_2027 | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | 0.887 |
AGB03042.1 | AGB03043.1 | Metfor_2029 | Metfor_2030 | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.890 |
AGB03042.1 | AGB03044.1 | Metfor_2029 | Metfor_2031 | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | Hypothetical protein. | 0.873 |
AGB03042.1 | AGB03045.1 | Metfor_2029 | Metfor_2032 | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | Hypothetical protein. | 0.599 |
AGB03042.1 | tfe | Metfor_2029 | Metfor_2028 | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...] | 0.887 |
AGB03043.1 | AGB03040.1 | Metfor_2030 | Metfor_2027 | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | 0.987 |
AGB03043.1 | AGB03042.1 | Metfor_2030 | Metfor_2029 | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | 0.890 |
AGB03043.1 | AGB03044.1 | Metfor_2030 | Metfor_2031 | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | Hypothetical protein. | 0.873 |
AGB03043.1 | AGB03045.1 | Metfor_2030 | Metfor_2032 | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | Hypothetical protein. | 0.599 |
AGB03043.1 | tfe | Metfor_2030 | Metfor_2028 | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...] | 0.929 |
AGB03044.1 | AGB03040.1 | Metfor_2031 | Metfor_2027 | Hypothetical protein. | PFAM: HD domain; TIGRFAM: TIGR00295 family protein; uncharacterized domain HDIG. | 0.859 |
AGB03044.1 | AGB03042.1 | Metfor_2031 | Metfor_2029 | Hypothetical protein. | Putative ATP-dependent carboligase; PFAM: ATP-grasp domain. | 0.873 |
AGB03044.1 | AGB03043.1 | Metfor_2031 | Metfor_2030 | Hypothetical protein. | Hypothetical protein; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.873 |
AGB03044.1 | AGB03045.1 | Metfor_2031 | Metfor_2032 | Hypothetical protein. | Hypothetical protein. | 0.599 |
AGB03044.1 | tfe | Metfor_2031 | Metfor_2028 | Hypothetical protein. | Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...] | 0.859 |
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