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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB03109.1Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains. (493 aa)    
Predicted Functional Partners:
AGB03108.1
Ni,Fe-hydrogenase III large subunit; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
 
 
 0.998
AGB03111.1
Formate hydrogenlyase subunit 4; PFAM: NADH dehydrogenase.
 
 
 0.994
AGB03107.1
Ni,Fe-hydrogenase III small subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit.
 
 
 0.990
AGB03110.1
Hydrogenase 4 membrane component (E).
 
  
 0.973
AGB01234.1
Multisubunit Na+/H+ antiporter, MnhC subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L.
  
 
 0.969
AGB01241.1
NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus.
 
 
0.969
AGB03060.1
Hypothetical protein.
  
 
 0.959
AGB01240.1
Formate hydrogenlyase subunit 4; PFAM: NADH dehydrogenase.
 
 
 0.927
AGB01228.1
Ni,Fe-hydrogenase III large subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase.
 
 
 0.918
AGB01237.1
Ni,Fe-hydrogenase III large subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase; Belongs to the complex I 49 kDa subunit family.
 
 
 0.914
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.