Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB03180.1Hypothetical protein. (258 aa)    
Predicted Functional Partners:
AGB03178.1
Putative Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
 
  
 0.861
AGB03179.1
Hypothetical protein.
 
     0.826
AGB03181.1
Hypothetical protein.
 
     0.795
AGB03182.1
Hypothetical protein.
 
     0.790
AGB03184.1
Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family.
  
  
 0.787
AGB03183.1
Hypothetical protein.
  
  
 0.762
AGB01226.1
NADH:ubiquinone oxidoreductase chain I-like protein; PFAM: 4Fe-4S binding domain.
 
 
 0.689
AGB01236.1
NADH:ubiquinone oxidoreductase chain I-like protein.
  
 
 0.641
AGB02266.1
PFAM: Conserved region in glutamate synthase; Belongs to the glutamate synthase family.
  
 
 0.617
AGB03327.1
Ferredoxin; PFAM: 4Fe-4S binding domain.
  
 
 0.614
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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