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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB03261.1PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor. (110 aa)    
Predicted Functional Partners:
AGB03259.1
Anti-sigma regulatory factor (Ser/Thr protein kinase); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.995
AGB03260.1
Serine phosphatase RsbU, regulator of sigma subunit; PFAM: 5TMR of 5TMR-LYT; Stage II sporulation protein E (SpoIIE).
 
 
 0.973
AGB02990.1
HAMP domain-containing protein,cache domain-containing protein; PFAM: HAMP domain; Cache domain; Stage II sporulation protein E (SpoIIE).
 
 
 0.949
AGB03204.1
Serine phosphatase RsbU, regulator of sigma subunit; PFAM: Cache domain; HAMP domain; Stage II sporulation protein E (SpoIIE).
 
 
 0.949
AGB03262.1
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
 
   
 0.844
AGB03263.1
ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; PFAM: ABC transporter.
       0.624
cofH
Radical SAM domain protein, CofH subfamily; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine.
  
    0.600
AGB01221.1
Radical SAM domain protein, CofH subfamily; PFAM: Radical SAM superfamily; TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit; radical SAM domain protein, CofH subfamily.
  
    0.600
cofG
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D- ribitylimino)-5,6-dihydrouracil.
  
    0.600
AGB01209.1
PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
  
     0.568
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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