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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB03788.1Uncharacterized protein; PFAM: von Willebrand factor type A domain. (224 aa)    
Predicted Functional Partners:
AGB03790.1
PFAM: Protein kinase domain.
 
 
 0.987
AGB03789.1
Hypothetical protein.
 
     0.957
AGB01903.1
Cobaltochelatase subunit; PFAM: von Willebrand factor type A domain; AAA domain (dynein-related subfamily); TIGRFAM: cobaltochelatase subunit.
  
 
 0.880
AGB01939.1
Magnesium chelatase ATPase subunit D; PFAM: von Willebrand factor type A domain; AAA domain (dynein-related subfamily); TIGRFAM: cobaltochelatase subunit; magnesium chelatase ATPase subunit D.
  
 
 0.880
AGB01940.1
Mg-chelatase subunit ChlI; PFAM: AAA domain (dynein-related subfamily).
  
 
 0.880
AGB02704.1
PFAM: Protein kinase domain.
 
 
 
 0.878
AGB02938.1
PFAM: Protein kinase domain.
   
 
 0.778
AGB02028.1
Parallel beta-helix repeat (two copies); PFAM: Protein kinase domain; Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies).
   
 
 0.722
AGB02112.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
 
 
 0.546
AGB03787.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.
     
 0.520
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.