Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB03794.1Hypothetical protein. (221 aa)    
Predicted Functional Partners:
AGB02112.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
 
     0.654
AGB03319.1
Hypothetical protein.
  
     0.594
AGB02678.1
PFAM: Tetratricopeptide repeat.
 
     0.543
AGB03795.1
Hypothetical protein.
       0.541
AGB03792.1
Hypothetical protein.
       0.505
AGB03793.1
ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family.
       0.505
AGB02496.1
Putative phosphoesterase or phosphohydrolase.
  
     0.495
AGB03166.1
PAS domain S-box; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
  
     0.461
AGB02806.1
PFAM: Uncharacterised protein family (UPF0150).
  
     0.422
Your Current Organism:
Methanoregula formicica
NCBI taxonomy Id: 593750
Other names: M. formicica SMSP, Methanomicrobiales archaeon SMSP, Methanoregula formicica SMSP, Methanoregula formicica str. SMSP, Methanoregula formicica strain SMSP
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