STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI13642.1PFAM: cytochrome P450; KEGG: cytochrome P450. (399 aa)    
Predicted Functional Partners:
AEI12673.1
Glycosyltransferase, MGT family; KEGG: fal:FRAAL1959 putative glycosyltransferase (N-glycosyltransferase) (N-glycosyl transferase NGT); TIGRFAM: glycosyltransferase, MGT family; PFAM: glycosyl transferase family 28.
  
 
 0.947
AEI11180.1
KEGG: nfa:nfa45530 hypothetical protein.
  
 0.928
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.899
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.858
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.856
AEI13641.1
KEGG: rpb:RPB_3579 hypothetical protein.
  
 
 0.790
AEI11448.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
  
 0.757
AEI11245.1
PFAM: AMP-dependent synthetase and ligase; KEGG: AMP-dependent synthetase and ligase.
  
 0.745
AEI13553.1
PFAM: AMP-dependent synthetase and ligase; KEGG: AMP-dependent synthetase and ligase.
  
 0.745
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 0.649
Your Current Organism:
Cellulomonas gilvus
NCBI taxonomy Id: 593907
Other names: C. gilvus ATCC 13127, Cellulomonas gilvus ATCC 13127, Cellulomonas gilvus str. ATCC 13127, Cellulomonas gilvus strain ATCC 13127, Cellvibrio gilvus ATCC 13127
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.